3Scan offers these tissue data subsets openly and free of use to all. Please contact us if you would like to receive a USB drive with the full samples.
Mouse kidney microvasculature – 1 gigavoxel
A mouse kidney was perfused with India Ink, staining all vasculature. This dataset is 1 gigavoxel (GV, 1 billion voxels or 3D pixels), comprising 1.1% of the total kidney sample volume (89.4 GV). This 3D volume represents 0.003 cm3 from a total volume of 0.25 cm3.
Region shape: 2048 x 2048 x 250
Total number of voxels: 1.049 GV
Size in memory (uncompressed): 1.049 GB
Voxel size (um): 0.7, 0.7, 6
Mouse intestine – 5 gigavoxel
A mouse intestine was whole-mount stained with H&E. Cell nuclei and other acidic structures are stained blue with hematoxylin, alkaline structures are stained pink with eosin. This dataset is 5.25 GV, comprising 4.1% of the total intestine sample (147.3 GV). This 3D volume represents 0.033 cm3 from a total volume of 1.0 cm3.
Region shape: 6000 x 3500 x 250 x 3)
Total number of voxels: 5.250 GV
Size in memory (uncompressed): 15.750 GB
Voxel size (um): 1.056, 1.056, 6